Model family
Protein language model
Sequence model trained on protein sequences. Kept distinct from transformer because the corpus needs to count it separately; see CLAUDE.md §5 note on Model becoming a first-class entity later.
22articles
22Structural biology
0Materials & chemistry
0Astronomy
aix-00156
Protein language model and two classifiers predict where ATP binds on proteins
aix-00152
Neural networks trained to find the cutting site on serpin proteins
aix-00151
Classifier sorts true from false AlphaFold predictions of human protein pairs
aix-00162
Software splits coiled-coil proteins into short windows for AlphaFold to model
aix-00166
Neural network assigns protein domains to structural families from sequence alone
aix-00145
Repeating-coil proteins designed from random sequences using AlphaFold2 in an evolution loop
aix-00140
Model labels which protein residues are active sites and what job they do
aix-00138
AI-labelled protein pairs used to test how well function predictors handle unknown proteins
aix-00180
Teaching protein language models to rank mutants from a few dozen lab measurements
aix-00181
Protein language model embeddings used to predict succinylation sites in proteins
aix-00184
Machine learning scores short protein stretches that mark proteins for destruction
aix-00185
Protein language model trained to spot lactylated lysines in rice proteins
aix-00186
Language model trained on protein sequences predicts shape and stability of disordered proteins
aix-00115
A shared test set for predicting which enzyme carries out a reaction
aix-00112
Protein language model embeddings tested against classical descriptors for spotting resistance genes
aix-00110
Deep learning trained on robotic peptide mapping predicts where antibody proteins degrade
aix-00089
Neural networks trained on atomic surroundings score how mutations change proteins
aix-00081
Language models trained on protein sequences used to predict sugar-attachment sites
aix-00072
Attention patterns inside a protein language model used to cut sequences into reusable units
aix-00065
Model predicts how fast an enzyme works on a substrate, with uncertainty attached
aix-00063
Adding a term for the unfolded protein sharpens AI stability predictions
aix-00056